PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G175500.1.p
Common NameGLYMA_20G175500, LOC100812904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 342aa    MW: 39194.8 Da    PI: 6.7896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G175500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.6e-54191471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPt+eelv +yLk+k+++ k++l +vi e+d+yk+ePwd++      +++++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  Glyma.20G175500.1.p  19 VPPGFRFHPTEEELVGYYLKRKINSLKIDL-DVIVEIDLYKMEPWDIQDrckLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATG 107
                          69****************************.99**************952432234677******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk+v+s k++ +g++ktLvfykgrap+g+ktdW+mheyr 
  Glyma.20G175500.1.p 108 RDKAVMS-KNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRH 147
                          *******.8999***************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6014168IPR003441NAC domain
PROSITE profilePS5100557.7319168IPR003441NAC domain
PfamPF023653.5E-2820146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTLAPIPERS SSIDMESCVP PGFRFHPTEE ELVGYYLKRK INSLKIDLDV IVEIDLYKME  60
PWDIQDRCKL GYEQQNEWYF FSHKDKKYPT GTRTNRATAA GFWKATGRDK AVMSKNRIIG  120
MRKTLVFYKG RAPNGRKTDW IMHEYRHQTS EHGPPQEEGW VVCRAFRKPS PSHRQGFDPW  180
CSTSSQQQHF FRDQIQSYAR PLSIADILNE TNNVPHPVEG TSFSHSFNSD NQQHLNNIIS  240
NQTAIIMDKQ LLELPQLDSP TASLAIKECN QQQHNGLTNE EYCSDERSNS SAQGIDWKSF  300
DNLFGSQLSD NAAYFSHPNL PLVMPHNHDQ ASHILGCFPD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4991685168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-119AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606215.10.0PREDICTED: NAC domain-containing protein 30-like
SwissprotQ9C8W91e-118NAC30_ARATH; NAC domain-containing protein 30
TrEMBLK7N4330.0K7N433_SOYBN; Uncharacterized protein
STRINGGLYMA20G31551.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71383247
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-108vascular related NAC-domain protein 7